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  • EMMAA Architecture and Approach
  • EMMAA Dashboard
  • Walkthrough tutorial
  • EMMAA modules reference
    • EMMAA Statement (emmaa.statements)
    • EMMAA Model (emmaa.model)
    • EMMAA Model Test Framework (emmaa.model_tests)
    • Analyze model test results (emmaa.analyze_tests_results)
    • Query classes (emmaa.queries)
    • Process model queries (emmaa.answer_queries)
    • Priors (emmaa.priors)
    • Readers (emmaa.readers)
    • EMMAA’s Database (emmaa.db)
    • AWS model update and testing pipeline (emmaa.aws_lambda_functions)
    • xDD client
    • EMMAA’s Subscription Service (emmaa.subscription)
    • Utilities (emmaa.util)
    • Functions for node and edge filtering (emmaa.filter_functions)
  • Configuring an EMMAA model
  • ASKE Reports
  • ASKE-E Reports
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  • EMMAA modules reference
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EMMAA modules reference¶

  • EMMAA Statement (emmaa.statements)
  • EMMAA Model (emmaa.model)
  • EMMAA Model Test Framework (emmaa.model_tests)
  • Analyze model test results (emmaa.analyze_tests_results)
  • Query classes (emmaa.queries)
  • Process model queries (emmaa.answer_queries)
  • Priors (emmaa.priors)
    • Literature Prior (emmaa.priors.literature_prior)
    • TCGA Cancer Prior (emmaa.priors.cancer_prior)
    • Gene List Prior (emmaa.priors.gene_list_prior)
    • Reactome Prior (emmaa.priors.reactome_prior)
    • Querying Prior Statements (emmaa.priors.prior_stmts)
  • Readers (emmaa.readers)
    • AWS reader (emmaa.readers.aws_reader)
    • INDRA DB client reader (emmaa.readers.db_client_reader)
  • EMMAA’s Database (emmaa.db)
    • The Database Schema (emmaa.db.schema)
    • Database Manager (emmaa.db.manager)
  • AWS model update and testing pipeline (emmaa.aws_lambda_functions)
  • xDD client
  • EMMAA’s Subscription Service (emmaa.subscription)
    • Notifications functions (emmaa.subscription.notifications)
    • Email Service (emmaa.subscription.email_service)
    • Email Utilities (emmaa.subscription.email_util)
  • Utilities (emmaa.util)
  • Functions for node and edge filtering (emmaa.filter_functions)
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