Readers (emmaa.readers
)¶
AWS reader (emmaa.readers.aws_reader
)¶
-
emmaa.readers.aws_reader.
read_pmid_search_terms
(pmid_search_terms)[source]¶ Return extracted EmmaaStatements given a PMID-search term dict.
Parameters: pmid_search_terms (dict) – A dict representing a set of PMIDs pointing to search terms that produced them. Returns: A list of EmmaaStatements extracted from the given PMIDs. Return type: list[ emmaa.model.EmmaaStatement
]
INDRA DB client reader (emmaa.readers.db_client_reader
)¶
-
emmaa.readers.db_client_reader.
read_db_doi_search_terms
(doi_search_terms)[source]¶ Return extracted EmmaaStatements from INDRA database given a DOI-search term dict.
Parameters: doi_search_terms (dict) – A dict representing a set of DOIs pointing to search terms that produced them. Returns: A list of EmmaaStatements extracted from the given DOIs. Return type: list[ emmaa.model.EmmaaStatement
]
-
emmaa.readers.db_client_reader.
read_db_ids_search_terms
(id_search_terms, id_type)[source]¶ Return extracted EmmaaStatements from INDRA database given an ID-search term dict.
Parameters: id_search_terms (dict) – A dict representing a set of IDs pointing to search terms that produced them. Returns: A list of EmmaaStatements extracted from the given IDs. Return type: list[ emmaa.model.EmmaaStatement
]
-
emmaa.readers.db_client_reader.
read_db_pmid_search_terms
(pmid_search_terms)[source]¶ Return extracted EmmaaStatements from INDRA database given a PMID-search term dict.
Parameters: pmid_search_terms (dict) – A dict representing a set of PMIDs pointing to search terms that produced them. Returns: A list of EmmaaStatements extracted from the given PMIDs. Return type: list[ emmaa.model.EmmaaStatement
]