Readers (emmaa.readers
)¶
AWS reader (emmaa.readers.aws_reader
)¶
- emmaa.readers.aws_reader.read_pmid_search_terms(pmid_search_terms)[source]¶
Return extracted EmmaaStatements given a PMID-search term dict.
- Parameters
pmid_search_terms (dict) – A dict representing a set of PMIDs pointing to search terms that produced them.
- Returns
A list of EmmaaStatements extracted from the given PMIDs.
- Return type
list[
emmaa.model.EmmaaStatement
]
INDRA DB client reader (emmaa.readers.db_client_reader
)¶
- emmaa.readers.db_client_reader.read_db_doi_search_terms(doi_search_terms)[source]¶
Return extracted EmmaaStatements from INDRA database given a DOI-search term dict.
- Parameters
doi_search_terms (dict) – A dict representing a set of DOIs pointing to search terms that produced them.
- Returns
A list of EmmaaStatements extracted from the given DOIs.
- Return type
list[
emmaa.model.EmmaaStatement
]
- emmaa.readers.db_client_reader.read_db_ids_search_terms(id_search_terms, id_type)[source]¶
Return extracted EmmaaStatements from INDRA database given an ID-search term dict.
- Parameters
id_search_terms (dict) – A dict representing a set of IDs pointing to search terms that produced them.
- Returns
A list of EmmaaStatements extracted from the given IDs.
- Return type
list[
emmaa.model.EmmaaStatement
]
- emmaa.readers.db_client_reader.read_db_pmid_search_terms(pmid_search_terms)[source]¶
Return extracted EmmaaStatements from INDRA database given a PMID-search term dict.
- Parameters
pmid_search_terms (dict) – A dict representing a set of PMIDs pointing to search terms that produced them.
- Returns
A list of EmmaaStatements extracted from the given PMIDs.
- Return type
list[
emmaa.model.EmmaaStatement
]