EMMAA: Ecosystem of Machine-maintained models with Automated Analysis¶
- EMMAA Architecture and Approach
- EMMAA Dashboard
- Walkthrough tutorial
- 1. Visit the EMMAA Dashboard
- 2. (Optional) Register and log in
- 3. Explore the COVID-19 Model page
- 4. Examine and curate statement evidences
- 5. Browse all statements in the model
- 6. Examine drug-virus effect explanations
- 7. Drill-down into explanation results
- 8. Browse the model from the perspective of papers
- 9. Query the model to find source-target paths
- 10. Query the model to find upstream regulator paths
- 11. Chat with a machine assistant about the COVID-19 model
- 12. Follow the COVID-19 EMMAA model on Twitter
- EMMAA modules reference
- EMMAA Statement (
emmaa.statements
) - EMMAA Model (
emmaa.model
) - EMMAA Model Test Framework (
emmaa.model_tests
) - Analyze model test results (
emmaa.analyze_tests_results
) - Query classes (
emmaa.queries
) - Process model queries (
emmaa.answer_queries
) - Priors (
emmaa.priors
) - Readers (
emmaa.readers
) - EMMAA’s Database (
emmaa.db
) - AWS model update and testing pipeline (
emmaa.aws_lambda_functions
) - xDD client
- EMMAA’s Subscription Service (
emmaa.subscription
) - Utilities (
emmaa.util
) - Functions for node and edge filtering (
emmaa.filter_functions
)
- EMMAA Statement (
- Configuring an EMMAA model
- ASKE Reports
- ASKE-E Reports
- ASKE-E Month 1 Milestone Report
- ASKE-E Month 2 Milestone Report
- ASKE-E Month 4 Milestone Report
- ASKE-E Month 5 Milestone Report
- ASKE-E Month 6 Milestone Report
- ASKE-E Month 7 Milestone Report
- ASKE-E Month 9 Milestone Report
- Integrating the COVID-19 Disease Map community model
- Notifications about general model updates
- Figures and tables from xDD as non-textual evidence for model statements
- Integration with the Uncharted UI
- Semantic separation of model sources for analysis and reporting
- Assembling and analyzing dynamical models
- Creating a training corpus for identifying causal precedence in text
- Knowledge/model curation using BEL annotations
- Formalizing EMMAA model configuration
- ASKE-E Month 10 Milestone Report
- ASKE-E Month 11 Milestone Report
- ASKE-E Month 12 Milestone Report
- EMMAA and its role in the integrated architecture
- Applying EMMAA model to COVID-19 therapeutics
- Review article on automated modeling
- Progress on inter-sentence causal connective extraction from text
- Integrating belief information in the EMMAA dashboard
- Extending the ontology to epidemiology
- STonKGs
- PyKEEN Updates
- BioCreative participation and new Walkthrough Tutorial